Prerequisites:
Addressed to researchers already familiar with R and basics of statistics
The following packages are required:
- RNAseq123
- edgeR
- Mus.musculus
- limma
- Glimma
- RColorBrewer
Description:
In the BAD DAY 3 we will present the Bioconductor work-flow R package RNAseq123 from http://www.bioconductor.org/help/workflows/RNAseq123/.
We will in particular discuss how to:
- Import and organise data
- Preprocess data
- Perform exploratory plots
- Analyse Differential Expression in genes
- Perform Exploratory analysis and graphical representation of DE genes
- Test for Gene set enrichment